However, Caitlyn, who is father to her youngest children Kendall Jenner and Kylie Jenner, was noticeably absent from the collage shared online - and fans were quick to criticise the star for her "cruel intentions".
After attracting backlash, Kris swiftly removed the post, before uploading a modified version, which featured Caitlyn. She has yet to comment on the controversy.
While the mum-of-six was seemingly reluctant to honour Caitlyn, formerly Bruce Jenner, with a Father's Day tribute, supermodel Kendall shared a touching post in honour of her dad.
Alongside a clip of a young Kendall sharing a sweet kiss with her father, as well as a snap of herself, Kylie and Caitlyn, she simply penned: "I love you."
Kendall also took to her Instagram Stories to share a tribute to mum Kris' first husband, the late Robert Kardashian, penning alongside a snap of him and his dog: "In honour of Father's Day. Robert Kardashian and his doberman."